Abstract 65P
Background
This study describes a six-marker multiplex immunofluorescence (mIF) panel, along with novel marker, LRRC15. Expression in cancer is typically in the stromal compartment. However, in cancers of mesenchymal origin, LRRC15 was also found on tumour cells. Recent studies suggest roles for LRRC15 in invasion and immune modulation. This study demonstrates that mIF paired with machine learning significantly advances our ability to classify and analyse tissue samples from cancer patients.
Methods
A tissue microarray (TMA) of 174 cases of early-stage lung adenocarcinoma with 8 TMA cores from each patient was used for mIF. Tumour cells were distinguished from stromal cells with pan-cytokeratin, while markers for CD68, CD3, αSMA, vimentin, and LRRC15 were used to study immune infiltrates and the stromal compartment. Indica HALO AI image analysis platform was used to classify and analyse mIF images. Density and population of multiple cell phenotypes were then calculated. Classification models were trained and the Kruskal Wallis algorithm was used to rank importance of phenotypes. Kaplan-Meier survival curves were then plotted for highest ranked phenotypes.
Results
Several phenotypes displayed predictors of survival that outperformed previous prognostic scores. Top phenotypes from Kaplan-Meier survival analysis showed that in tumour area, high LRRC15 density predicts poorer 5-year survival in patients (HR: 1.61, 95% CI: 0.956 to 2.72, P=0.044), while high CD68 density predicts better 5-year survival (HR: 0.472, 95% CI: 0.296 to 0.753, P= 0.0006). Furthermore, high CD68 density with LRRC15 exclusion is a more powerful predictor of 5-year survival (HR: 0.444, 95% CI: 0.279 to 0.708, P= 0.0002).
Conclusions
We have demonstrated a mIF and machine learning pipeline that could enhance the performance of survival predictors. Furthermore, understanding LRRC15 in the TME could contribute to precision medicine in lung cancer.
Editorial acknowledgement
Clinical trial identification
Legal entity responsible for the study
University of St Andrews.
Funding
Melville Trust.
Disclosure
All authors have declared no conflicts of interest.
Resources from the same session
121P - DNA methylation co-operates with genomic alterations during non-small cell lung cancer evolution
Presenter: Nnenna Kanu
Session: Cocktail & Poster Display session
Resources:
Abstract
122P - Comprehensive multi-omics profiling identifies prognostic and predictive subtypes in renal cell carcinoma
Presenter: Sanha Park
Session: Cocktail & Poster Display session
Resources:
Abstract
123P - Copy number from ulcWGS to predict TNBC molecular subtypes in the IBCSG 22-00 trial
Presenter: Andrea Joaquin Garcia
Session: Cocktail & Poster Display session
Resources:
Abstract
124P - Targeting neoantigens in chronic lymphocytic leukemia (CLL) for personalized T cell therapy
Presenter: Gurvinder Kaur
Session: Cocktail & Poster Display session
Resources:
Abstract
125P - Detection and analysis of medulloblastoma subtype-specific copy number variations from RNA-seq data for improved risk-based subtype classification
Presenter: Ivan Martinez de Estibariz Royuela
Session: Cocktail & Poster Display session
Resources:
Abstract
126P - Genomic and transcriptomic profiles define smokers and non-smokers lung squamous cell carcinoma patients
Presenter: Matteo Canale
Session: Cocktail & Poster Display session
Resources:
Abstract
128P - Metastatic migrations in lung cancer: Insights from the PEACE autopsy programme
Presenter: Sonya Hessey
Session: Cocktail & Poster Display session
Resources:
Abstract
129P - NGS prescreening program for refractory solid tumors outside standard indications in a public network of cancer centers
Presenter: Paula Sàbat Viltró
Session: Cocktail & Poster Display session
Resources:
Abstract
130P - Transcriptomic analysis of patients with metastatic hormone-sensitive prostate cancer to identify genomic signatures involved in the transition from androgen-dependent to androgen-independent phenotype
Presenter: Giovanna Pecoraro
Session: Cocktail & Poster Display session
Resources:
Abstract
131P - Benchmarking whole exome sequencing in the German network for personalized medicine
Presenter: Michael Menzel
Session: Cocktail & Poster Display session
Resources:
Abstract