Abstract 21P
Background
Liquid biopsy biomarkers are important for early cancer screening. However, the available samples are usually from patients who have been clinically diagnosed, resulting in relatively higher tumor burdens compared to the point-of-care population for cancer screening. Due to this tumor burden spectrum bias, those biomarkers may significantly lose their screening efficacy in early cancer detection.
Methods
We provided a statistical model of biomarker distribution along with tumor burden based on the Tumor-derived Biomarker Circulation Model (TBCM). According to the observed sample with high tumor burden, we estimated and thereafter optimized the diagnostic efficacy of biomarker panel under given low tumor burden distribution. We test our method via simulated data based on literature of lung cancer and renal cancer. The efficacies of biomarker panels were measured using the area under the receiver operating curve (AUROC), sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV). Tumor burden spectrum bias was estimated comparing the efficacy measures between the observed samples and the target screening population. Additionally, we compared the efficacy measures of biomarker panels obtained from our method against those from traditional methods.
Results
For lung cancer, the traditional biomarker panel had AUC 0.881 among observed samples, which decreased into AUC 0.675 among target screening population. Our improved biomarker panel achieved AUC 0.752 among target screening population. For renal cancer, the traditional biomarker panel had AUC 0.937 among observed samples, which decreased into AUC 0.581 among target screening population. Our improved biomarker panel achieved AUC 0.711 among target screening population.
Conclusions
Tumor burden spectrum bias is a significant factor contributing to the failure of liquid biopsy biomarkers in early cancer screening. Our method can correctly adjust this bias and substantially improve the efficacy of biomarkers in the target screening population.
Editorial acknowledgement
Clinical trial identification
Legal entity responsible for the study
The author.
Funding
National Natural Science Foundation of China.
Disclosure
The author has declared no conflicts of interest.
Resources from the same session
132P - Deciphering aggressive behavior in uterine inflammatory myofibroblastic tumors: Clinicopathological and molecular analysis
Presenter: Nikola Hajkova
Session: Cocktail & Poster Display session
Resources:
Abstract
133P - Exploring genomic instability at the single-cell level using a new method for the inference of copy number alterations
Presenter: Lucrezia Patruno
Session: Cocktail & Poster Display session
Resources:
Abstract
134P - SPICE: Probabilistic reconstruction of copy-number evolution in cancer
Presenter: Abigail Bunkum
Session: Cocktail & Poster Display session
Resources:
Abstract
135P - Revealing the third kind of pathway of colorectal cancer developing from laterally spreading tumors
Presenter: Jianshe Yang
Session: Cocktail & Poster Display session
Resources:
Abstract
136P - Investigating the evolutionary and regulatory dynamics of acquired resistance to BTK inhibitors in activated B-cell diffuse large B-cell lymphoma cells
Presenter: Luminita Ruje
Session: Cocktail & Poster Display session
Resources:
Abstract
137P - PHANTOM: Bootstrap inference of single-cell tumour phylogenies by integrating sequencing read counts
Presenter: Rija Zaidi
Session: Cocktail & Poster Display session
Resources:
Abstract
138P - Analysis of master regulatory transcription factors and their associated transcriptomic profiles in SCLC patients
Presenter: Janik Riese
Session: Cocktail & Poster Display session
Resources:
Abstract
139P - Rewiring of cis-regulatory and kinase signalling networks in acalabrutinib-resistant ABC DLBCL cells
Presenter: Pavel Artemov
Session: Cocktail & Poster Display session
Resources:
Abstract
140P - MYC subgroups delineate specific transcriptomic landscape and shape response to radiotherapy in SCLC
Presenter: Caterina de Rosa
Session: Cocktail & Poster Display session
Resources:
Abstract
141P - An unconditionally dynamic culture system for cancer stem cell
Presenter: Ya-Juan Zhu
Session: Cocktail & Poster Display session
Resources:
Abstract