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Poster session 11

1617P - Multi-gene copy number variation risk-score for prediction of survival and therapy response outcome in treatment-naïve metastatic castrate resistant prostate cancer

Date

14 Sep 2024

Session

Poster session 11

Topics

Molecular Oncology

Tumour Site

Prostate Cancer

Presenters

Manish Kohli

Citation

Annals of Oncology (2024) 35 (suppl_2): S962-S1003. 10.1016/annonc/annonc1607

Authors

M. Kohli1, D. Nix2, C. Herberts3, C. Maurice-Dror4, A.W. Wyatt5, B. Schmidt6, B. Fairbourn7, A. Tan8, L. Wang9, Z. Wilmot10

Author affiliations

  • 1 Department Of Medicine, University of Utah Health - Huntsman Cancer Institute, 84112 - Salt Lake City/US
  • 2 Oncological Sciences, University of Utah Health - Huntsman Cancer Institute, 84112 - Salt Lake City/US
  • 3 Department Of Urologic Sciences, UBC - University of British Columbia - Faculty of Medicine, V6T 1Z3 - Vancouver/CA
  • 4 Faculty Of Medicine, Faculty of Medicine, University of British Columbia - Vancouver General Hospital, V5Z 1M9 - Vancouver/CA
  • 5 Department Of Urological Sciences, University of British Columbia, Vancouver/CA
  • 6 Department Of Urology, University of Utah Health - Huntsman Cancer Institute, 84112 - Salt Lake City/US
  • 7 School Of Medicine, University of Utah, 84112 - Salt Lake City/US
  • 8 Department Of Oncological Sciences, University of Utah Health - Huntsman Cancer Institute, 84112 - Salt Lake City/US
  • 9 Cancer Epidemiology Program, H. Lee Moffitt Cancer Center, 33612 - Tampa/US
  • 10 Department Of Oncologic Sciences, University of Utah Health - Huntsman Cancer Institute, 84112 - Salt Lake City/US

Resources

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Abstract 1617P

Background

We determined the performance of a multi-gene copy number variation (CNV) risk score in tissue and plasma cell-free DNA (cfDNA) biospecimens obtained in treatment- naïve metastatic castrate-resistant prostate cancer (mCRPC) patients to predict survival outcomes.

Methods

Metastatic tissue and cfDNA biospecimen sequencing results for CNV gains in AR, MYC, COL22A1, PIK3CA, PIK3CB, NOTCH1 and losses in TMPRSS2, NCOR1, ZPTB18, TP53, NKX3-1 from three independent treatment-naïve mCRPC cohorts (dbGaP, SU2C/PCF and the Vancouver Prostate Centre-University of British Columbia-VPC/BC) were used to to calculate a multi-gene weighted CNV risk score in all cohorts. Survival outcomes included overall survival (OS) and progression free survival (PFS) to first-line abiraterone-acetate/prednisone (AA/P) or enzalutamide (E) therapies adminsitered as mCRPC treatment in a specific cohort. The range of the risk scores obtained in each cohort was dichotomized at the median into a “high-risk” score (above median) and “low-risk” score (below median) and association with OS/PFS performed. Univariate and multi-variate Cox Proportional Hazard Regressions were applied for survival analyses (P<0.05 for significance).

Results

Of 1137 metastatic tissue-cfDNA biospecimens, 662/1137 were treatment-naive for mCRPC therapies and 311 were matched metastatic tissue - cfDNA pairs. The table summarizes results of comparisons between “high” and “low-risk” scores and survivals in each cohort. Pts with high-risk scores derived from metastatic tissue or cfDNA in all cohorts at the univariate and multi-variate level had the shortest OS. High risk scores also had shorter time to response to first-line AA/P and E therapies. Table: 1617P

Risk-score based survival in each independent cohort

Range of CNV risk score in the cohort(Median) Number of high risk vs low risk patients (pts) per cohort(N) Median OS for high vs low risk (Months)(P-value) Median PFS for high vs low risk scores for AA/P or E (Months)(P-value)
dbGaP metastatic tissue cohort (N=68) -0.11 to 4.01 (0.37) 30 vs 38 24.9 vs 30.6 P=0.039 For AA/P 7.8 vs 14 (P=0.0064)
SU2C/PCF metastatic tissue cohort (N=98) -0.35 to 4.11 (2.23) 49 vs 49 22.2 vs 33.7 P=0.003 Not applicable
VPC/BC cfDNA cohort (N=311) 0 - 9.4 (0) First-line AA/P (N=137 pts) 51 vs 86 First-line E (N=174 pts)71 vs 103 15.5 vs 38.8 P

Conclusions

A multi-gene CNV risk score predicts survival outcomes and therapy responses to first-line AA/P and E in treatment-naive mCRPC patients and can be used for designing future enrichment type clinical trials.

Clinical trial identification

PROMOTE (Prostate Cancer Medically-Optimized Genome-Enhanced Therapy), NCT01953640.

Editorial acknowledgement

Legal entity responsible for the study

Manish Kohli.

Funding

Has not received any funding.

Disclosure

M. Kohli: Non-Financial Interests, Personal, Non remunerated activity, Travel only: Triomics Inc.; Non-Financial Interests, Personal, Non remunerated activity, Non-compensated: Nferene Inc. C. Maurice-Dror: Financial Interests, Personal, Financially compensated role, Advisory board/Honoraria/Travel: Jansen, Merck; Financial Interests, Personal, Financially compensated role, Honoraria/Travel: Pfizer; Financial Interests, Personal, Advisory Board: Eisai; Financial Interests, Personal, Financially compensated role: Biomica. A.W. Wyatt: Financial Interests, Personal, Advisory Board: AstraZeneca, Bayer, Pfizer, Merck, Janssen, EMD Serono; Financial Interests, Institutional, Research Funding: ESSA Pharma, Tyra Biosciences. B. Schmidt: Financial Interests, Personal, Advisory Board: ImmunityBio. All other authors have declared no conflicts of interest.

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