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Poster session 16

1181P - Heterogeneity and prognostic diagnosis of KRAS-mutated population and KRAS G12C subtype among patients (pts) with advanced NSCLC (aNSCLC): A real-world study aided by machine learning approaches

Date

10 Sep 2022

Session

Poster session 16

Topics

Cancer Intelligence (eHealth, Telehealth Technology, BIG Data);  Pathology/Molecular Biology;  Molecular Oncology;  Cancer Epidemiology

Tumour Site

Non-Small Cell Lung Cancer

Presenters

Herbert Ho Fung Loong

Citation

Annals of Oncology (2022) 33 (suppl_7): S448-S554. 10.1016/annonc/annonc1064

Authors

H.H.F. Loong1, T. Liu2, T. Pattipaka3, R. Hong4, T.W. Smith5, S.M. Knoll6, V. Pretre7, R. Caparica Bitton8, F. Ye9, A. Farago10

Author affiliations

  • 1 Department Of Clinical Oncology, The Chinese University of Hong Kong - Prince of Wales Hospital, 36 - Sha Tin/HK
  • 2 Biostatistics, Brown University, 02912 - Providence/US
  • 3 Rwe, Novartis International AG - Basel, 4056 - Basel/CH
  • 4 Institute For Systems Genetics, New York University Medical Center, 10016 - New York/US
  • 5 Rwe And Data Science, Novartis Pharmaceuticals Corporation, 07936 - East Hanover/US
  • 6 Gva, Novartis Pharmaceuticals Corporation, 07936 - East Hanover/US
  • 7 Lung And Optimized Products, Novartis Pharmaceuticals Corporation, 07936 - East Hanover/US
  • 8 Drug Development, Novartis Pharma MCH, CH-4056 - Basel/CH
  • 9 Medical Affairs, Novartis AG - Novartis Corporation Branch Office, 10169 - New York/US
  • 10 Translational Clinical Oncology Department, Novartis Institutes for BioMedical Research, 02139 - Cambridge/US

Resources

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Abstract 1181P

Background

There is growing evidence suggesting genetic heterogeneity among pts with KRAS-mutated (KRAS mt) NSCLC. The real-world (RW) evidence on prognosis of KRAS and KRAS G12C is limited.

Methods

Adult pts with aNSCLC, without ALK, EGFR, or ROS, were selected from de-identified Flatiron Health-Foundation Medicine Clinico-genomic Database (01/01/2011 - 31/10/2021). The de-identified data originated from ∼280 US cancer clinics (∼800 sites of care). Pts were assigned to 3 cohorts: KRAS mt, KRAS G12C mt, KRAS wild-type (KRAS-wt). KMEANS was used to identify clusters within KRAS mt and KRAS G12C mt. Overall survival was estimated using random forest (RF) and Cox regression. Patient features in the models included demographics, vitals, lab reports, molecular features, first-line treatment, and metastatic sites.

Results

Of 11569 pts included, 7714 (66.7%) were KRAS-wt and 3855 (33.3%) were KRAS mt. Among KRAS mt, 1514 (39.3%) had KRAS G12C mt. 91% of KRAS mt and KRAS G12C mt pts had non-squamous tumors (non-sq), vs 62% in KRAS-wt. 94 features were included in machine learning models. Three-cluster model was identified as the best model based on within-cluster-sum of squared errors. Compared to KRAS-wt, KRAS and KRAS G12C were associated with higher mortality risk in univariable Cox model for pts with non-sq, bone metastasis, or KEAP1 mutations (HRs from 1.11 to 1.42; all p-values <0.05). Using RF and Cox combined model, bone metastasis, ECOG, liver metastases, albumin count and TP53 mutations were top 5 ranked important prognostic factors for KRAS mt and KRAS G12C subgroups. Table: 1181P

Characteristics KRAS KRAS G12C KRAS-Wt
N 3855 1514 7714
Median age (y) 69 69 69
Female (%) 58% 60% 43%
Non-sq (%) 91% 91% 62%
Ever smokers (%) 93% 97% 86%
Bone metastases (%) 31% 33% 27%
Brain metastases (%) 20% 20% 14%

Conclusions

Machine learning methods demonstrated heterogeneity within KRAS mt and KRAS G12C subtype. KRAS G12C subtype was a negative prognostic factor for pts with non-sq tumors, bone metastases and KEAP1 co-mutations. Machine learning methods can be promising tools to support treatment individualization in pts with aNSCLC in RW.

Clinical trial identification

Editorial acknowledgement

Legal entity responsible for the study

Novartis Pharmaceuticals Corporation.

Funding

Novartis Pharmaceuticals Corporation.

Disclosure

H.H.F. Loong: Financial Interests, Institutional, Invited Speaker: Boehringer Ingelheim, MSD; Financial Interests, Personal, Invited Speaker: Eli Lilly, Illumina, Bayer, Guardant Health; Financial Interests, Personal, Advisory Board: Novartis, Takeda. T. Pattipaka: Financial Interests, Personal, Full or part-time Employment: Novartis International AG; Financial Interests, Personal, Stocks/Shares: Novartis International AG. T.W. Smith, S.M. Knoll, V. Pretre: Financial Interests, Personal, Full or part-time Employment: Novartis; Financial Interests, Personal, Stocks/Shares: Novartis. R. Caparica Bitton: Financial Interests, Institutional, Full or part-time Employment: Novartis Pharma AG; Financial Interests, Institutional, Stocks/Shares: Novartis. F. Ye: Financial Interests, Personal, Full or part-time Employment: Novartis Pharmaceutical; Financial Interests, Personal, Stocks/Shares: Novartis Pharmaceutical. A. Farago: Financial Interests, Personal, Full or part-time Employment: Novartis; Financial Interests, Personal, Stocks/Shares: Novartis; Non-Financial Interests, Personal, Proprietary Information: Novartis. All other authors have declared no conflicts of interest.

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