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Poster Display session

364P - Interpretable machine learning for prostate biopsy: Cohort study

Date

07 Dec 2024

Session

Poster Display session

Presenters

Jindong Dai

Citation

Annals of Oncology (2024) 35 (suppl_4): S1531-S1543. 10.1016/annonc/annonc1690

Authors

J. Dai1, J. Zhao2, P. Shen3, H. Zeng4

Author affiliations

  • 1 Urology, West China Hospital of Sichuan University, 610041 - Chengdu/CN
  • 2 Urology, West China School of Medicine/West China Hospital of Sichuan University, 610041 - Chengdu/CN
  • 3 Urology Surgery Department, SCU - Sichuan University - Huaxi Campus, 610041 - Chengdu/CN
  • 4 Urology Department, West China School of Medicine/West China Hospital of Sichuan University, 610041 - Chengdu/CN

Resources

This content is available to ESMO members and event participants.

Abstract 364P

Background

The objective of this study is to develop prediction models and provide diagnostic results for prostate biopsy among patients.

Methods

This paper presents an improved tree model, called the Light gradient boosting machine model, for building a prostate cancer risk prediction model. The research data used in this study (Waves 2008-2022) are obtained from 1987 patients who underwent transperineal biopsy at West China Hospital. All patients had biopsy indications (high levels of prostate specific antigen (PSA), suspect lesions in digital rectal examination (DRE) or magnetic resonance imaging (MRI) suspect lesions). A total of 13 baseline variables were considered as candidate features, and eight machine learning models were compared in the experiment. SHapley Additive exPlanations (SHAP) was used for explaining the prediction model. The analyses were conducted in 2023.

Results

The Light gradient boosting machine model demonstrated the best performance, achieving an area under the receiver operating characteristic (ROC) curve of 0.76 (CatBoost=0.71, KNN=0.65, LDA=0.61, CART=0.67, SVM=0.64, NB=0.55, XGBoost=0.71). According to the interpretable analysis, the apparent diffusion coefficient (ADC) of MRI was identified as the most important feature in the prediction model. Other important features included prostate volume, red blood cell (RBC) count, neutrophil count, and platelet count.

Conclusions

This study suggests that optimal models show promise in screening out patients at high risk for prostate cancer in prostate biopsies. The decisions regarding prostate biopsies should specifically focus on the ADC of MRI, prostate volume, and blood routine indices such as RBC count, platelet count, and neutrophil count.

Clinical trial identification

Editorial acknowledgement

Legal entity responsible for the study

The authors.

Funding

Has not received any funding.

Disclosure

All authors have declared no conflicts of interest.

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